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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5336673_5336944_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5336673 - 5336944
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTGGCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TTCTCCTTATTT
Flanking Amino Acid:
QRIQLFIHNHEEHHSMQVDS
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
64.2
0.32
0.9
59.9
35.6
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
74.7
0.85
1.5
87.57
38.6

Associated Gene:

Gene:
PLOD1
Ensembl Gene ID:
ENSAPLG00000011324
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011890
5326264 - 5342283
16020