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Intron Name: Anas_platyrhynchos_platyrhynchos_22_5339439_5339983_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5339439 - 5339983

Intron Length:

545

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGTTGA

5'SS Class:

strong_major

3'SS Sequence:

TTCTGTCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGATCAT

U12 Branch Point Sequence:

CAAAACTTGATC

Flanking Amino Acid:

MAFCHNVRNQGVFMYLTNRH

Intron Amino Acid Position:

494

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

1.2

38.1

Major BPS

0.57

1.2

41.2

Major PPT

82.9

0.74

0.8

77.3

31.5

Minor 5ss

-1.7

2.7

41.8

44.6

Minor BPS

48.6

-0.1

1.5

52.97

38.4

Associated Gene:

Gene:

PLOD1

Ensembl Gene ID:

ENSAPLG00000011324

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011890

5326264 - 5342283

16020