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Intron Name: Anas_platyrhynchos_platyrhynchos_22_5340098_5340359_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5340098 - 5340359

Intron Length:

262

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGATAA

5'SS Class:

strong_major

3'SS Sequence:

CTTTTAATTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TATCTTTTAATT

Flanking Amino Acid:

DLWQIFSNPEDWREKYIHEN

Intron Amino Acid Position:

532

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.9

0.89

0.8

79.1

24.3

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

0.76

0.8

78.3

33.7

Minor 5ss

31.8

-2.1

37.8

Minor BPS

72.2

0.78

1.1

33.1

Associated Gene:

Gene:

PLOD1

Ensembl Gene ID:

ENSAPLG00000011324

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011890

5326264 - 5342283

16020