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Intron Name: Anas_platyrhynchos_platyrhynchos_22_5340426_5340782_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5340426 - 5340782

Intron Length:

357

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGAAAA

5'SS Class:

strong_major

3'SS Sequence:

CCACATTCTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAC

U12 Branch Point Sequence:

CTGTTCTCACCT

Flanking Amino Acid:

AALKGKLVEMPCPDVYWFPI

Intron Amino Acid Position:

554

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

0.9

78.7

29.9

Major BPS

0.87

0.8

85.6

Major PPT

71.9

0.49

0.9

35.7

Minor 5ss

32.9

-1.9

2.9

37.3

41.2

Minor BPS

52.3

0.15

1.9

71.18

Associated Gene:

Gene:

PLOD1

Ensembl Gene ID:

ENSAPLG00000011324

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011890

5326264 - 5342283

16020