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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5340888_5341282_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5340888 - 5341282
Intron Length:
395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GATTCATTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTCATGATT
Flanking Amino Acid:
YGKWSTGDNTDSRIQGGYEN
Intron Amino Acid Position:
589

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.3
32.8
Major BPS
100
1.24
0.5
100
0
Major PPT
78.3
0.64
0.9
74.2
40.2
Minor 5ss
33.3
-1.9
2.9
41.3
44.8
Minor BPS
63.5
0.51
1.6
81.74
33.2

Associated Gene:

Gene:
PLOD1
Ensembl Gene ID:
ENSAPLG00000011324
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011890
5326264 - 5342283
16020