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Intron Name: Anas_platyrhynchos_platyrhynchos_22_5341430_5341741_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5341430 - 5341741

Intron Length:

312

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTATA

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACCTGAT

U12 Branch Point Sequence:

TGTACCTGATGT

Flanking Amino Acid:

EKLYPGYYTKTQFELAFVVR

Intron Amino Acid Position:

638

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.1

0.92

0.9

87.1

Major BPS

0.5

59.3

39.1

Major PPT

89.1

0.88

0.6

84.4

23.4

Minor 5ss

37.9

-1.4

3.1

50.4

46.1

Minor BPS

48.3

-0

70.71

45.5

Associated Gene:

Gene:

PLOD1

Ensembl Gene ID:

ENSAPLG00000011324

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011890

5326264 - 5342283

16020