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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5345075_5345778_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5345075 - 5345778
Intron Length:
704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TATATTTTGATT
Flanking Amino Acid:
YINESSSFLEETHKNVELDP
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
75
38.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
77.7
0.62
0.9
75.2
39
Minor 5ss
43.2
-0.7
2.9
56.2
47.9
Minor BPS
62.9
0.49
1.2
75.6
35.2

Associated Gene:

Gene:
MFN2
Ensembl Gene ID:
ENSAPLG00000012438
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013027
5344960 - 5354080
9121