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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5345915_5346257_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5345915 - 5346257
Intron Length:
343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
GATCTCTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
CATCCTGTGATC
Flanking Amino Acid:
RRHMKVAFFGRTSNGKSTVI
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
77.5
32.9
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
76
0.59
0.9
66.3
40.4
Minor 5ss
29.1
-2.4
2.8
34.7
41.7
Minor BPS
46.1
-0.3
2
55.15
37.7

Associated Gene:

Gene:
MFN2
Ensembl Gene ID:
ENSAPLG00000012438
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013027
5344960 - 5354080
9121