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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5346421_5346965_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5346421 - 5346965
Intron Length:
545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATTTC
5'SS Class:
major
3'SS Sequence:
CTGTTTTGAGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAGCAT
U12 Branch Point Sequence:
CCTGTTTTGAGT
Flanking Amino Acid:
EGSEEKKNVKTVNQLAHALH
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
75.8
34.9
Major BPS
63.3
0.33
1.5
74
41.2
Major PPT
67.9
0.4
1
66.4
39.5
Minor 5ss
43
-0.8
3.2
61.2
43.7
Minor BPS
47.7
-0.1
1.7
60.97
44.1

Associated Gene:

Gene:
MFN2
Ensembl Gene ID:
ENSAPLG00000012438
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013027
5344960 - 5354080
9121