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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5347502_5347598_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5347502 - 5347598
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTATGTTCA
5'SS Class:
weak_major
3'SS Sequence:
CCTTTTTGCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTAATGTAAGT
Flanking Amino Acid:
ANSESTLMQTEKQFFHKVNE
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.1
64.4
36.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
74.6
0.55
0.9
71.5
33
Minor 5ss
48.8
-0.1
2.3
64.3
41
Minor BPS
44.4
-0.3
2.3
67.73
43.1

Associated Gene:

Gene:
MFN2
Ensembl Gene ID:
ENSAPLG00000012438
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013027
5344960 - 5354080
9121