About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5347707_5348048_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5347707 - 5348048
Intron Length:
342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTGGT
5'SS Class:
major
3'SS Sequence:
GTTTATCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TCCTGTTTATCC
Flanking Amino Acid:
SASEPEYMEEVRRQHMERCT
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.2
70
40.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
77.3
0.61
0.9
74.1
36.3
Minor 5ss
36.9
-1.5
3.1
50.4
45.9
Minor BPS
49.2
-0
2
61.09
45

Associated Gene:

Gene:
MFN2
Ensembl Gene ID:
ENSAPLG00000012438
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013027
5344960 - 5354080
9121