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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5348203_5348441_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5348203 - 5348441
Intron Length:
239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TGTTTTGTACTT
Flanking Amino Acid:
IQKAQGMPEGGGALADGFQV
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
89.3
0.88
0.6
88.5
21
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
47.7
-0.1
2.2
71.21
40.9

Associated Gene:

Gene:
MFN2
Ensembl Gene ID:
ENSAPLG00000012438
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013027
5344960 - 5354080
9121