About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5348770_5349098_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5348770 - 5349098
Intron Length:
329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGGAAA
5'SS Class:
major
3'SS Sequence:
TTCTTGCCATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
GGCTTTTTGACA
Flanking Amino Acid:
DSVHIAAQEQRVYCLEMREE
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
71.3
35.7
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
75.7
0.58
0.9
74.7
34.9
Minor 5ss
26.6
-2.7
3
31.2
42.7
Minor BPS
60.6
0.33
1.2
62.84
37.5

Associated Gene:

Gene:
MFN2
Ensembl Gene ID:
ENSAPLG00000012438
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013027
5344960 - 5354080
9121