About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5352656_5353041_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5352656 - 5353041
Intron Length:
386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTTCC
5'SS Class:
major
3'SS Sequence:
TTCTGTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTACTTTTCACT
Flanking Amino Acid:
TGSNCSHQVQQELAGTFAHL
Intron Amino Acid Position:
668

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1
66
34.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
83.9
0.76
0.8
79.1
32.9
Minor 5ss
38.2
-1.3
2.8
50.7
39.7
Minor BPS
58.4
0.34
1.7
77.56
39

Associated Gene:

Gene:
MFN2
Ensembl Gene ID:
ENSAPLG00000012438
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013027
5344960 - 5354080
9121