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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5353177_5354010_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5353177 - 5354010
Intron Length:
834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAC
U12 Branch Point Sequence:
TTTGTCTTCACA
Flanking Amino Acid:
DSLQSKAKLLRNKAGWLDSE
Intron Amino Acid Position:
713

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
82.9
24
Major BPS
65.2
0.38
1
57.3
39.1
Major PPT
85
0.79
0.8
80
32.1
Minor 5ss
34.2
-1.8
3.2
46.6
48.7
Minor BPS
64.5
0.45
1.9
78.35
38.8

Associated Gene:

Gene:
MFN2
Ensembl Gene ID:
ENSAPLG00000012438
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013027
5344960 - 5354080
9121