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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5362808_5363037_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5362808 - 5363037
Intron Length:
230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTTTATGAATT
Flanking Amino Acid:
LLTSQSKEWKKEAAHVTFQS
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
78.6
35.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
90.9
0.92
0.6
84.7
30.2
Minor 5ss
33.8
-1.8
3.4
49.7
46.6
Minor BPS
58.8
0.36
1.7
77.48
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023889
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035039
5362567 - 5366506
3940