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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5363141_5363609_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5363141 - 5363609
Intron Length:
469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCACATTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
CTTTCCTTCACA
Flanking Amino Acid:
RPFLGYDWIAGLLDTDSSVA
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
80.2
34.3
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
76.1
0.59
0.9
73.3
36
Minor 5ss
34.1
-1.8
3.2
49.5
46.7
Minor BPS
75
0.78
1.7
83.03
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023889
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035039
5362567 - 5366506
3940