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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5363722_5363925_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5363722 - 5363925
Intron Length:
204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTGGG
5'SS Class:
major
3'SS Sequence:
TGTGTTTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
CTGTCACTAACT
Flanking Amino Acid:
KEACIHEQPLEPKALDCIIP
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
60.8
44.4
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
79.7
0.67
0.8
77.9
36.6
Minor 5ss
33.4
-1.9
3.2
36.7
41.6
Minor BPS
57.3
0.31
2
77.96
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023889
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035039
5362567 - 5366506
3940