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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5365025_5365882_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5365025 - 5365882
Intron Length:
858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAC
U12 Branch Point Sequence:
TGCCATATAACA
Flanking Amino Acid:
EPADSLALPSHCLVGWENII
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
72.7
38.8
Major BPS
69.1
0.48
1
70
32.1
Major PPT
84.3
0.77
0.7
79.4
26.2
Minor 5ss
35
-1.7
2.9
45.5
42.6
Minor BPS
47.9
-0.1
1.8
59.69
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023889
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035039
5362567 - 5366506
3940