About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5388712_5391176_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5388712 - 5391176
Intron Length:
2465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GTATCCTCCACA
Flanking Amino Acid:
LELCCYRCPSGYAKRKACPT
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1.2
81.8
38.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
91.6
0.94
0.6
84.9
29.9
Minor 5ss
34.8
-1.7
2.7
42.5
44.3
Minor BPS
55.7
0.17
2
69.69
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013618
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014176
5387413 - 5397217
9805