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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5391303_5391722_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5391303 - 5391722
Intron Length:
420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTTGAT
5'SS Class:
major
3'SS Sequence:
TTCTTTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATCAT
U12 Branch Point Sequence:
TGCTACTCCATC
Flanking Amino Acid:
HCDACVSCTKESDLVEKVPC
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
74.2
36.3
Major BPS
73
0.57
1.2
74
41.2
Major PPT
89.3
0.88
0.6
85
22.7
Minor 5ss
33
-1.9
3.5
48.8
47.4
Minor BPS
44.8
-0.4
2.1
56.19
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013618
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014176
5387413 - 5397217
9805