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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5392075_5392524_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5392075 - 5392524
Intron Length:
450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTGCA
5'SS Class:
major
3'SS Sequence:
TTTCATTCCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTCTCTTTCATT
Flanking Amino Acid:
SSTDICKPHTDCAKLNKVAQ
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
68.8
36.4
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
76.9
0.6
0.8
70
36.2
Minor 5ss
34.2
-1.8
3.1
38.1
40.6
Minor BPS
60.1
0.4
1.8
74.65
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013618
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014176
5387413 - 5397217
9805