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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5392806_5393020_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5392806 - 5393020
Intron Length:
215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACGAAG
5'SS Class:
major
3'SS Sequence:
TTCTGAGCAGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
CCCTTCTGAGCA
Flanking Amino Acid:
TSDKGETTTGGLVWGVVLSV
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.2
69.6
42.7
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
60.8
0.24
1
56.2
39.1
Minor 5ss
37.2
-1.5
3.1
47.8
47.9
Minor BPS
48.2
-0.1
1.7
55.11
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013618
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014176
5387413 - 5397217
9805