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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5393129_5395719_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5393129 - 5395719
Intron Length:
2591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ACTACTGATCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TCATGCTTACTA
Flanking Amino Acid:
KKRIFILKGKWPEEKELIDR
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
86
24.8
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
53.1
0.07
1.2
49.4
42.7
Minor 5ss
43.1
-0.8
3.1
62.8
42
Minor BPS
50.6
0.02
2
63.45
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013618
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014176
5387413 - 5397217
9805