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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5408144_5410598_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5408144 - 5410598
Intron Length:
2455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCTTTT
5'SS Class:
major
3'SS Sequence:
TTGTTTTCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
GATGCTTTCACC
Flanking Amino Acid:
LNKCCSQCRPGQYKTESCSH
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.2
78.8
38.3
Major BPS
77.7
0.69
1
81
30.2
Major PPT
84.7
0.78
0.7
80.9
31.3
Minor 5ss
51.1
0.04
2.9
75.5
40.6
Minor BPS
53.5
0.09
1.9
63.86
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013632
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014200
5400643 - 5416071
15429