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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5410728_5411344_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5410728 - 5411344
Intron Length:
617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTAAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTGTTTTAAAA
Flanking Amino Acid:
CFACSPPCRKGFVQNQTCTS
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
69.7
43.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
65.8
0.36
1.1
60.7
43
Minor 5ss
46.1
-0.4
3.2
63.6
48.1
Minor BPS
59.4
0.29
1.5
67.32
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013632
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014200
5400643 - 5416071
15429