About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5411495_5412353_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5411495 - 5412353
Intron Length:
859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTTTCTTTAAAG
Flanking Amino Acid:
CGKGYRVFKQGTDSTDTECK
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.1
25.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
80.7
0.69
1
82
27.2
Minor 5ss
39.6
-1.2
2.8
49.5
46.6
Minor BPS
71.4
0.53
1.5
72.3
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013632
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014200
5400643 - 5416071
15429