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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5412448_5412532_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5412448 - 5412532
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGCCAG
5'SS Class:
major
3'SS Sequence:
TTGTTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TCTTTTCTAACT
Flanking Amino Acid:
SYNTNCTPHTVCKSVAVPGN
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.3
0.36
1.2
52.7
45.9
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
89.3
0.88
0.7
84.9
29.9
Minor 5ss
39.2
-1.2
3.1
48.4
47.2
Minor BPS
67
0.61
1.6
83.74
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013632
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014200
5400643 - 5416071
15429