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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5412727_5413451_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5412727 - 5413451
Intron Length:
725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCTAT
5'SS Class:
major
3'SS Sequence:
CTTTTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
NSVPDISHIIGSVTGPLLLV
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
71.4
36.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
90.6
0.91
0.7
88.8
26.8
Minor 5ss
40.6
-1.1
3.1
56.2
48
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013632
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014200
5400643 - 5416071
15429