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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5414552_5414890_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5414552 - 5414890
Intron Length:
339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
GCAACTGTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTTCTGCAACT
Flanking Amino Acid:
YLPPTREADAPFSPSEKQCD
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
76.1
33.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
66.3
0.37
1
61.3
44.2
Minor 5ss
32.3
-2
3.3
44.3
43.6
Minor BPS
61.4
0.44
2.2
87.98
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013632
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014200
5400643 - 5416071
15429