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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5415165_5415769_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5415165 - 5415769
Intron Length:
605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
CCATGCTTAATC
Flanking Amino Acid:
CGDRHNSASSAEHSGNGGTQ
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
87.8
0.85
0.7
85.4
29.3
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
57.9
0.23
1.8
62.45
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013632
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014200
5400643 - 5416071
15429