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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5422955_5423830_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5422955 - 5423830
Intron Length:
876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
GTGCTTTCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAA
U12 Branch Point Sequence:
TGTGCTTTCAAT
Flanking Amino Acid:
TDQLSVALLKGAVELENLPL
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
84.7
28.3
Major BPS
70.6
0.51
1.1
71.6
36.4
Major PPT
66.5
0.37
1
62.6
38.6
Minor 5ss
37.2
-1.4
3.5
55
49.2
Minor BPS
51.4
0.12
2
73.53
43.4

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014431
5422858 - 5521456
98599
ENSAPLT00000029463
5422858 - 5521456
98599
ENSAPLT00000018950
5422858 - 5521456
98599