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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5424721_5426083_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5424721 - 5426083
Intron Length:
1363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTGTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTATTTTTATTT
Flanking Amino Acid:
VVTRIVENIELKIQDVHLRF
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
75.5
40.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.9
0.67
0.8
73.8
36.8
Minor 5ss
45.5
-0.5
3.1
65.9
39.3
Minor BPS
58.8
0.35
1.5
72.71
38.8

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029463
5422858 - 5521456
98599
ENSAPLT00000018950
5422858 - 5521456
98599
ENSAPLT00000014431
5422858 - 5521456
98599