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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5426530_5426869_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5426530 - 5426869
Intron Length:
340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTGTAACCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
GTTCTTGTAACC
Flanking Amino Acid:
LGDLPPGQLQEAMDKSMESR
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
67.7
37.6
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
70
0.45
0.9
62.6
38.5
Minor 5ss
35.9
-1.6
3.3
46.1
49.1
Minor BPS
52.5
0.06
2
67.82
37.8

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018950
5422858 - 5521456
98599
ENSAPLT00000014431
5422858 - 5521456
98599
ENSAPLT00000029463
5422858 - 5521456
98599