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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5427041_5428040_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5427041 - 5428040
Intron Length:
1000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACACT
5'SS Class:
strong_major
3'SS Sequence:
CTTCAACTAAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TACTCTTCAACT
Flanking Amino Acid:
LETIPLKLSQMQYQQIMGFL
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
77.8
36.9
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
57.5
0.17
1.1
57.4
36.4
Minor 5ss
41.4
-1
3
58.6
45.7
Minor BPS
69.3
0.68
1.5
81.34
40.3

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029463
5422858 - 5521456
98599
ENSAPLT00000018950
5422858 - 5521456
98599
ENSAPLT00000014431
5422858 - 5521456
98599