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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5428920_5430025_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5428920 - 5430025
Intron Length:
1106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTAGA
5'SS Class:
major
3'SS Sequence:
TTTGTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
ATTTACTTAATC
Flanking Amino Acid:
KGEPLSTAEEAEMCRIEDEQ
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
72.5
38.4
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
90.6
0.91
0.7
88.7
28.3
Minor 5ss
41.3
-1
2.5
51.9
44.5
Minor BPS
76.4
0.81
1.4
82.04
31.3

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014431
5422858 - 5521456
98599