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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5432015_5432215_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5432015 - 5432215
Intron Length:
201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAAGT
5'SS Class:
major
3'SS Sequence:
GTTTATATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATGTGTTTATAT
Flanking Amino Acid:
ECAFMQLEFSGVKILAESLP
Intron Amino Acid Position:
532

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
70.5
39.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.7
0.71
0.9
78.3
39.6
Minor 5ss
40.6
-1
3
58.1
46.1
Minor BPS
47.4
-0.1
2.1
67.07
43.9

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029463
5422858 - 5521456
98599
ENSAPLT00000018950
5422858 - 5521456
98599
ENSAPLT00000014431
5422858 - 5521456
98599