About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5436054_5436930_F

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5436054 - 5436930
Intron Length:
877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGCCT
5'SS Class:
strong_major
3'SS Sequence:
TAATCCACAGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTTTTTTAAAT
Flanking Amino Acid:
LGRILLTNSQESKRNADTFS
Intron Amino Acid Position:
743

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.7
41.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
51.5
0.03
1.1
52
36.4
Minor 5ss
39.5
-1.2
3.3
57
47.3
Minor BPS
75.1
0.86
1.2
87.12
31.6

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014431
5422858 - 5521456
98599