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Intron Name: Anas_platyrhynchos_platyrhynchos_22_5439148_5439497_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5439148 - 5439497

Intron Length:

350

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTATGTTAA

5'SS Class:

strong_major

3'SS Sequence:

TTTCTCTTAACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTCAT

U12 Branch Point Sequence:

TTTCTCTTAACA

Flanking Amino Acid:

DFFESLNKGHAFHILNNTTI

Intron Amino Acid Position:

1482

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

0.9

74.6

Major BPS

83.4

0.83

0.8

83.7

25.7

Major PPT

84.4

0.77

0.8

81.1

29.4

Minor 5ss

45.7

-0.4

2.5

54.4

45.2

Minor BPS

1.06

88.68

27.3

Associated Gene:

Gene:

VPS13D

Ensembl Gene ID:

ENSAPLG00000013749

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029463

5422858 - 5521456

98599

ENSAPLT00000018950

5422858 - 5521456

98599

ENSAPLT00000014431

5422858 - 5521456

98599