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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5439650_5440886_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5439650 - 5440886
Intron Length:
1237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGTGA
5'SS Class:
major
3'SS Sequence:
TTCTACATTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTTTCTACATT
Flanking Amino Acid:
IEGKFVNPLQVVLAKHVYEQ
Intron Amino Acid Position:
1533

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1
61.7
39.4
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
76
0.59
0.8
70
34.9
Minor 5ss
41.5
-0.9
3.2
55.7
48.5
Minor BPS
57.4
0.31
2.1
82.74
39.5

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029463
5422858 - 5521456
98599
ENSAPLT00000018950
5422858 - 5521456
98599
ENSAPLT00000014431
5422858 - 5521456
98599