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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5441922_5442860_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5441922 - 5442860
Intron Length:
939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATTTG
5'SS Class:
major
3'SS Sequence:
TTTGTTTTACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
TTTGTTTTACCA
Flanking Amino Acid:
EPINTKLDLKVHSLSLVLNK
Intron Amino Acid Position:
1878

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
73.8
37.5
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
83.5
0.75
0.9
78
40.1
Minor 5ss
49.3
-0
2.5
66.4
45.1
Minor BPS
61
0.34
1.7
73.92
38.7

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029463
5422858 - 5521456
98599
ENSAPLT00000018950
5422858 - 5521456
98599
ENSAPLT00000014431
5422858 - 5521456
98599