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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5443472_5444409_F

Intron Information:

Intron Rank:
22
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
5443472 - 5444409
Intron Length:
938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATGCATT
5'SS Class:
weak_major
3'SS Sequence:
ACCTCTCTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATTTTTGACC
Flanking Amino Acid:
GEEALIFQIYKYGRPDPLLQ
Intron Amino Acid Position:
1950

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
77.2
37.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.6
0.55
0.8
68.1
31.4
Minor 5ss
61
0.37
2.4
75.1
34.5
Minor BPS
72.8
0.7
1.1
77.59
32

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029463
5422858 - 5521456
98599
ENSAPLT00000018950
5422858 - 5521456
98599
ENSAPLT00000014431
5422858 - 5521456
98599