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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5444591_5445669_F

Intron Information:

Intron Rank:
23
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5444591 - 5445669
Intron Length:
1079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTATGTTTA
5'SS Class:
weak_major
3'SS Sequence:
TTGCTTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TGTGAATTAAGT
Flanking Amino Acid:
RQRAAVEGQTVRDKAQRASR
Intron Amino Acid Position:
2011

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
70.8
35.6
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
79
0.65
0.8
73
37.3
Minor 5ss
57.3
0.25
2.3
71.8
39.2
Minor BPS
47.9
-0
2.1
70.99
45.3

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029463
5422858 - 5521456
98599
ENSAPLT00000018950
5422858 - 5521456
98599
ENSAPLT00000014431
5422858 - 5521456
98599