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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5445853_5448472_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5445853 - 5448472
Intron Length:
2620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCATTAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
CTATTGTTAATT
Flanking Amino Acid:
MPGTFSLKNKDSFQFSSPLG
Intron Amino Acid Position:
2072

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
78.6
0.71
1
78.6
31
Major PPT
78.4
0.64
0.9
74.5
33.9
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
58.2
0.34
2.1
75.74
41.7

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029463
5422858 - 5521456
98599
ENSAPLT00000018950
5422858 - 5521456
98599
ENSAPLT00000014431
5422858 - 5521456
98599