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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5449367_5449490_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5449367 - 5449490
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTGGTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TTCACCTTGAAA
Flanking Amino Acid:
LKLQVERNLDKELSHAVADI
Intron Amino Acid Position:
2215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
0.9
73.9
33
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
72
0.49
1
68.5
37.3
Minor 5ss
35.8
-1.6
2.8
40.4
40
Minor BPS
65.1
0.47
1.5
72.53
39.1

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029463
5422858 - 5521456
98599
ENSAPLT00000018950
5422858 - 5521456
98599
ENSAPLT00000014431
5422858 - 5521456
98599