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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5449663_5450686_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5449663 - 5450686
Intron Length:
1024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGAGGA
5'SS Class:
major
3'SS Sequence:
TTACCACTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
ATGTTCTTAAAA
Flanking Amino Acid:
PYDLQDPRIHTVLSGEVYTS
Intron Amino Acid Position:
2273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
68.1
37.1
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
78.1
0.63
0.9
74.4
35.1
Minor 5ss
32.2
-2
3.4
42.8
44.5
Minor BPS
71
0.65
1.3
74.7
36.6

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029463
5422858 - 5521456
98599
ENSAPLT00000018950
5422858 - 5521456
98599
ENSAPLT00000014431
5422858 - 5521456
98599