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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5451569_5453389_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5451569 - 5453389
Intron Length:
1821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTAGT
5'SS Class:
major
3'SS Sequence:
TGTTTTTTAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGTTTTTTAATA
Flanking Amino Acid:
PGAIQIELHYRSTKDSSSFT
Intron Amino Acid Position:
2380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.2
73.9
42.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
80
0.67
0.9
77.6
35.5
Minor 5ss
32.4
-2
2.9
43.2
43.7
Minor BPS
76.4
0.82
1
79.24
30.7

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029463
5422858 - 5521456
98599
ENSAPLT00000018950
5422858 - 5521456
98599
ENSAPLT00000014431
5422858 - 5521456
98599