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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5453656_5453808_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5453656 - 5453808
Intron Length:
153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGGG
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTATTATTAAAC
Flanking Amino Acid:
KQLEVKVNVTGTEFVVVEDV
Intron Amino Acid Position:
2469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
69.5
41.5
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
81.1
0.7
0.9
80.3
37.3
Minor 5ss
31.4
-2.1
3.2
40.6
45.6
Minor BPS
62.6
0.37
1.7
73.75
36.2

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029463
5422858 - 5521456
98599
ENSAPLT00000018950
5422858 - 5521456
98599
ENSAPLT00000014431
5422858 - 5521456
98599