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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5453943_5455131_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5453943 - 5455131
Intron Length:
1189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTAATTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTTTTAATT
Flanking Amino Acid:
PFSGSLFGIEVFSCRLGNEQ
Intron Amino Acid Position:
2514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.5
0.64
0.8
73.5
35.7
Minor 5ss
35.1
-1.7
2.7
42.8
44
Minor BPS
79
0.99
1
87.98
30.9

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029463
5422858 - 5521456
98599
ENSAPLT00000018950
5422858 - 5521456
98599
ENSAPLT00000014431
5422858 - 5521456
98599