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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5455288_5455656_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5455288 - 5455656
Intron Length:
369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATATTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAGAA
U12 Branch Point Sequence:
TCTTTCCCATTT
Flanking Amino Acid:
NSGDFPPILEIQLQALDIRL
Intron Amino Acid Position:
2566

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
79.7
29.1
Major BPS
62.2
0.3
1
59
38
Major PPT
76.3
0.59
0.8
74.7
29.4
Minor 5ss
41.6
-0.9
3.1
56.5
47.5
Minor BPS
46
-0.2
2
68.16
43.2

Associated Gene:

Gene:
VPS13D
Ensembl Gene ID:
ENSAPLG00000013749
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029463
5422858 - 5521456
98599
ENSAPLT00000018950
5422858 - 5521456
98599
ENSAPLT00000014431
5422858 - 5521456
98599